Reference

ukbkings	ukbkings: KCL R interface to UKB data on Rosalind/CREATE HPC
Query project data Functions to inpsect the field finder (includes field, name, type), add fields to a one-per-line file for variables of interest, and check codes for categorical variables.
bio_field()	Reads project-specific UKB field codes
bio_field_add()	Adds field column entries from a dataframe to a file
Create a dataframe Retrieve data for fields of interest and write as serialised dataframe.
bio_phen()	Reads and writes phenotype data for a subset of fields
bio_rename()	Updates column names
Retrieve record-level data Functions to retrieve UKB record-level data.
bio_record()	Reads record-level data from on-disk disk.frames
bio_record_map()	Applies a function to each record-level disk.frame
Retrieve returned data Functions to retrieve UKB returned data.
bio_return()	Reads returned data
Retrieve coding maps and lookups Functions to retrieve UKB codings.
bio_code()	Reads the UKB showcase codings for categorical variables
bio_code_primary_care()	Reads UKB reference data: primary care maps and lookups
Query genetic data Functions to inspect the genetic data available for a UKB project.
bio_gen_ls()	Lists project genetic directory contents
bio_gen_fam()	Read the project-specific fam file
bio_gen_related()	Read the project-specific relatedness file
bio_gen_related_remove()	Find relatives to remove
bio_gen_sqc()	Read the sample quality control file
bio_gen_ancestry()	Assigns 1000 Genomes super populations
bio_gen_write_plink_input()	Writes a two-column dataframe of IDs for PLINK input
Datasets Reference data.
drug_dmd_antidep	Curated dm+d antidepressant names
drug_pharmgkb	PharmGKB curated drug list
drug_gwas	Active ingredients and ATC code of UKB self-reported medications
Deprecated functionality Deprecated functions.
bio_gp()	Reads the primary care data
bio_covid()	Reads the COVID-19 data
bio_hesin()	Reads record-level HES in-patient data
bio_death()	Reads death records